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Published Papers

The following papers were written for and during Write it Right workshops, and were accepted for publication in journals or conference proceedings.
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  1. DFT-based molecular dynamics study of aqueous chloride solvation. J.M. Heuft and E.J. Meijer, J. Chem. Phys., 2003, 119, 11788. doi:10.1063/1.1624362
  2. A Reduced-Storage Implementation of the Lattice Boltzmann Equation. R. Argentini, A.F. Bakker and C.P. Lowe, LNCS, 2003, 2657, 987-996. OpenUrl link
  3. Mass Spectrometric Characterization of Functional Poly(methyl methacrylate) in Combination with Critical Liquid Chromatography. X. Jiang, P.J. Schoenmakers, J.L.J. van Dongen, X. Lou, V.G.R. Lima and J.C.M. Brokken-Zijp, Anal. Chem., 2004, 75, 5517-5524. doi:10.1021/ac034556r
  4. Efficiently Using Memory in Lattice Boltzmann Simulations. R. Argentini, A.F. Bakker and C.P. Lowe, Fut. Gen. Comp. Sys., 2004, 20, 973-980. doi:10.1016/j.future.2003.12.010
  5. Analysis of longitudinal metabolomics data. J.J. Jansen, H.C.J. Hoefsloot, H.F.M. Boelens, J. van der Greef, A.K. Smilde, Bioinformatics, 2004, 20, 2348-2446. doi:10.1093/bioinformatics/bth268
  6. Accurate Free Energies of Micelle Formation. R. Pool and P.G. Bolhuis, J. Phys. Chem. B, 2005, 109, 6650-6657. doi:10.1021/jp045576f
  7. The onset of the growing season in northwestern Europe, mapped using MODIS NDVI and calibrated using phenological ground observations. P. S. A. Beck , S. R. Karlsen, A. Skidmore, L. Nilsen, K. A. Høgda, Proc. 31st Int. Symp. Remote Sensing Environ. 2005. Full text PDF
  8. Differential regulation of urease activity in Helicobacter hepaticus and Helicobacter pylori. C. Belzer, J. Stoof, C. S. Beckwith, E. J. Kuipers, J. G. Kusters and A. H. M. van Vliet, Microbiol. 2005, 151, 3989-3995.
  9. Diagnosis of deep vein thrombosis and pulmonary embolism in pregnancy; a systematic review. W.S. Chan and J.S.Ginsberg, Thromb. Res., 2002, 107, 85-91.
  10. Segmentation in the pre-industrial labour market: women's work in the Dutch textile industry, 1581-1810. E. van Nederveen Meerkerk, Intl. Rev. Social History 2006, 51, 189-216.
  11. Oncogenic Ras blocks transforming growth factor-beta-induced cell-cycle arrest by degradation of p27 through a MEK/Erk/SKP2-dependent pathway. H. Schepers, A.T. Wierenga, B.J. Eggen and E. Vellenga, Exp Hematol. 2005, 33, 747-757. doi:10.1016/j.exphem.2005.04.006
  12. Technical Feasibility of Advanced Driver Assistance Systems (ADAS) for Road Traffic Safety. M. Lu, K. Wevers and R. van der Heijden, Transport. Plan. Technol., 2005, 28, 167-187. doi:10.1080/03081060500120282
  13. The IMS Health Ruling: Some Thoughts on its Significance for Legal Practice and its Consequences for Future Cases such as Microsoft. J. Houdijk, Eur. Business Org. Law Rev., 2005, 6, 467-495.
  14. Use of the local lymph node assay in assessment of immune function. F.A. van den Berg, K.A. Baken, J.P. Vermeulen, E.R. Gremmer, H. van Steeg, H. van Loveren Toxicology, 2005, 211, 107-114. doi:10.1016/j.tox.2005.03.003
  15. Ritonavir Impairs Lipoprotein Lipase-Mediated Lipolysis and Decreases Uptake of Fatty Acids in Adipose Tissue. M.A. den Boer, J.F. Berbee, P. Reiss, M. van der Valk, P.J. Voshol, F. Kuipers, L.M. Havekes, P.C. Rensen, J.A. Romijn. Arterioscler. Thromb. Vasc. Biol., 2006, 26, 124. doi:01.ATV.0000194073.87647.10v1
  16. Assessment of the Burden of Disease Among Inpatients in Specialized Units That Provide Psychotherapy. D.I. Soeteman, R. Timman, R.W. Trijsburg, R. Verheul, J.J.V. Busschbach, Psychiatr. Serv., 2005, 56, 1153-1155. abstract
  17. Click Chemistry as a Route to Cyclic Tetrapeptide Analogues: Synthesis of cyclo-[Pro-Val-psi(triazole)-Pro-Tyr]. V.D. Bock, R. Perciaccante, T.P. Jansen, H. Hiemstra, J.H. van Maarseveen, Org. Lett., 2006, 8, 919-922. doi://10.1021/ol053095o
  18. Sampling the multiple folding mechanisms of Trp-cage in explicit solvent. J. Juraszek and P.G. Bolhuis, Proc. Natl. Acad. Soc. USA, 2006, 103, 15859-15864.
  19. Logarithmic relaxation due to minimization of interactions in the Burridge-Knopoff model
    B.A.H. Huisman and A. Fasolino Phys. Rev. E, 2006, 74, 026110 doi://10.1103/PhysRevE.74.026110
  20. Testing statistical significance scores of sequence comparison methods using structure similarity T. Hulsen, J. de Vlieg, J.A.M. Leunissen and P.M.A. Groenen BMC Bioinformatics 2006, 7, 444 http://www.biomedcentral.com/1471-2105/7/44
  21. Logarithmic relaxation due to minimization of interactions in the Burridge-Knopoff model
    B.A.H. Huisman, A. Fasolino, Phys. Rev. E, 2006, 74, 026110 doi 10.1103/PhysRevE.74.026110
  22. Protonation of the Chromophore in the Photoactive Yellow Protein
    E.J.M. Leenders, L. Guidoni, U. Rothlisberger, J. Vreede, P.G. Bolhuis and E.J. Meijer, J. Phys. Chem. B., 2007, 111, 3765-3773. DOI: 10.1021/jp067158b
  23. The PI3K effector Arap3 interacts with the PI(3,4,5)P3 phosphatase SHIP2 in a SAM domain-dependent manner
    J.H. Raaijmakers, L. Deneubourg, H. Rehmann, J. de Koning, Z. Zhang, S. Krugmann, C. Erneux and J.L. Bos, Cellular Signalling, 2007, 19, 1249-1257 doi:10.1016/j.cellsig.2006.12.015
  24. Fluorescent Perylene Diimide Rotaxanes: Spectroscopic Signatures of Wheel-Chromophore Interactions
    J. Baggerman, D.C. Jagesar, R.A.L. Valle, J. Hofkens, F.C. De Schryver, F. Schelhase, F. Vgtle, A.M. Brouwer Chem. Eur. J., 2007, 13, 1291-1299 doi://10.1002/chem.200601014
  25. Signal-to-noise ratio of chemosensory event-related potentials
    S. Boesveldt, Clin. Neurophysiol., 2007 doi:10.1016/j.clinph.2006.11.004
  26. The impact of students. conceptions of constructivist assumptions on academic achievement and dropout.
    S.M.M. Loyens, R.M.J.P. Rikers and H.G. Schmidt, Studies in Higher Educ., 2007,
  27. Assessing the statistical validity of proteomics based biomarkers
    S. Smit, M.J. van Breemen, H.C.J. Hoefsloot, A.K. Smilde, J.M.F.G. Aerts and C.G. de Koster Anal. Chim. Acta 2007, 592, 210-217. doi://10.1016/j.aca.2007.04.043
  28. Newts under siege: range expansion of Triturus pygmaeus isolates populations of its sister species
    G. Espregueira Themudo, J. W. Arntzen Diversity and Distributions, 2007 doi://10.1111/j.1472-4642.2007.00373.x
  29. Oral administration of GW788388, an inhibitor of TGF-beta type I and II receptor kinases, decreases renal fibrosis. M. Petersen, M. Thorikay, M. Deckers, M. van Dinther, E.T. Grygielko, F. Gellibert, A.C. de Gouville, S. Huet, P. ten Dijke, N.J. Laping, Kidney Int. 2007, 73, 705-715.  
  30. On the generality of crowding: Visual crowding in size, saturation, and hue compared to orientation,  R. van den Berg, J. B. T. M. Roerdink, F. W. Cornelissen, J. of Vis. 7, 1 (2007). doi: 10.1167/7.2.14
  31. Health in young people: Social inhibition and negative affect and their relationship with self-reported somatic complaints, F.C. Jellesma, J. Developmen. Behav. Pediatr. 2008, 29, 94-100.
  32. Dry Sex in Suriname, T. van Andel, S. de Korte, D. Koopmans, J. Behari-Ramdas, S. Ruysschaert, J. Ethnopharmacol. 116, 84 (2008) doi:10.1016/j.jep.2007.11.003
  33. Impact of reforming catalyst on the anodic polarisation resistance in single-chamber SOFC fed by methane, C. Gaudillère, P. Vernoux and D. Farrusseng, Electrochem. Comm. 12, 1322 (2010). doi:10.1016/j.elecom.2010.07.010
  34. Reduced Proactive Inhibition in Schizophrenia Is Related to Corticostriatal Dysfunction and Poor Working Memory, Bram B. Zandbelt, Mariët van Buuren, René S. Kahn, Matthijs Vink.  Biological Psychiatry,  70, 1151-1158, (2011). doi:10.1016/j.biopsych.2011.07.028
  35. ITS, OTUs and beyond—fungal hyperdiversity calls for supplementary solutions. T. Vralstad, Molec. Ecol. 2011, 20, 2873-2875. DOI: 10.1111/j.1365-294X.2011.05149.x.
  36. Learning From Nature: Synthesis and Characterization of Longitudinal Polymer Gradient Materials Inspired by Mussel Byssus Threads, K. U. Claussen, R. Giesa, T. Scheibel, H.-W. Schmidt, Macromol. Rap. Comm., 33, 206-211 (2012). doi: 10.1002/marc.201100620
  37. Timo Maarleveld et al. (2014) StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological ProcessesStochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0079345

Last modified: Thursday, 19 June 2014, 10:42 AM
 
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